Software
AGHmatrix
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Contributor
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Software to compute relationship matrices for diploid and autopolyploid species.
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Amadeu, R. R., Cellon, C., Olmstead, J. W., Garcia, A. A., Resende, M. F., & Muñoz, P. R. (2016). AGHmatrix: R Package to construct relationship matrices for autotetraploid and diploid species: a blueberry example. The Plant Genome, 9(3).
Updog
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Contributor
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Updog is a package containing empirical Bayes approaches to genotype individuals (particularly polyploids) from next generation sequencing (NGS) data.
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Gerard, D., Ferrão, L. F. V., Garcia, A. A. F., & Stephens, M. (2018). Genotyping Polyploids from Messy Sequencing Data. Genetics, Genetics-301468.